STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT01877.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (352 aa)    
Predicted Functional Partners:
SFT01898.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.935
SFT01889.1
TRAP transporter, DctM subunit.
 
  
 0.931
SFT01931.1
Alkanesulfonate monooxygenase.
 
     0.888
SFT01920.1
Predicted oxidoreductase.
 
     0.868
SFT01950.1
Predicted dehydrogenase.
 
     0.850
SFT01939.1
Transcriptional regulator, GntR family.
 
     0.847
SFT01909.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
 
     0.622
SFT01867.1
Conserved hypothetical integral membrane protein.
 
     0.592
SFS51700.1
TRAP transporter, DctM subunit.
 
  
 0.504
SFS63533.1
TRAP transporter, DctM subunit.
 
  
 0.461
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.