STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT09753.1Peptide/nickel transport system substrate-binding protein. (494 aa)    
Predicted Functional Partners:
SFS98689.1
Peptide/nickel transport system permease protein.
 
 0.980
SFS98703.1
Peptide/nickel transport system permease protein.
 
 0.841
SFT03099.1
Peptide/nickel transport system permease protein.
 
 0.796
SFT01213.1
Peptide/nickel transport system permease protein.
 
 0.723
SFS31234.1
Peptide/nickel transport system permease protein.
 
 0.718
SFT24885.1
Peptide/nickel transport system permease protein.
 
 0.712
SFT09721.1
Succinyl-diaminopimelate desuccinylase.
 
     0.645
SFS80265.1
Peptide/nickel transport system permease protein.
 
 0.611
FabG
3-oxoacyl-[acyl-carrier protein] reductase.
 
     0.564
SFT03196.1
Peptide/nickel transport system permease protein.
 
 0.563
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.