STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT13864.1Glycine/D-amino acid oxidase. (427 aa)    
Predicted Functional Partners:
SFS42273.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 
 0.892
SFS75953.1
L-glutamine synthetase.
 
  
 0.500
SFT13873.1
Hypothetical protein.
  
    0.492
SFS82934.1
Thioredoxin reductase.
 
 
 0.457
SFT07271.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
 
 0.447
SFS42296.1
Sarcosine oxidase subunit delta.
 
 
 0.440
SFT06627.1
FAD dependent oxidoreductase.
 
     0.432
SFS75980.1
Glutamate--putrescine ligase; Belongs to the glutamine synthetase family.
 
  
 0.422
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.