STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT13072.1Polar amino acid transport system substrate-binding protein. (279 aa)    
Predicted Functional Partners:
SFT13080.1
Polar amino acid transport system permease protein.
   0.939
SFT13087.1
Polar amino acid transport system permease protein.
   0.937
SFT02565.1
Amino acid ABC transporter membrane protein 2, PAAT family.
   0.915
SFT05191.1
Polar amino acid transport system permease protein.
   0.914
SFT05206.1
Polar amino acid transport system permease protein.
   0.907
SFT06741.1
Polar amino acid transport system permease protein.
   0.903
SFT06584.1
Polar amino acid transport system permease protein.
   0.898
SFT13204.1
Polar amino acid transport system permease protein.
   0.891
SFS63765.1
Polar amino acid transport system permease protein.
   0.886
SFS63781.1
Polar amino acid transport system permease protein.
   0.885
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.