STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT18189.1Putative spermidine/putrescine transport system substrate-binding protein. (370 aa)    
Predicted Functional Partners:
SFT18177.1
Putative spermidine/putrescine transport system permease protein.
 
  
 0.933
SFT18183.1
Putative spermidine/putrescine transport system permease protein.
 
  
 0.905
SFT18196.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.758
SFT18204.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
 
     0.752
SFS91606.1
Putative spermidine/putrescine transport system permease protein.
 
  
 0.700
potA-2
Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
  
 0.626
SFS91617.1
Putative spermidine/putrescine transport system permease protein.
 
  
 0.619
SFT18164.1
Acyl-CoA synthetase (NDP forming).
 
     0.588
SFT18219.1
Gamma-butyrobetaine dioxygenase.
 
     0.570
SFS54768.1
Putative hydrolase of the HAD superfamily.
 
    0.531
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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