STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT18309.1TRAP transporter, DctM subunit. (429 aa)    
Predicted Functional Partners:
SFT18295.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.910
SFT18302.1
Tripartite ATP-independent transporter, DctQ component.
  
   0.747
SFT18317.1
Uncharacterized OsmC-related protein.
       0.727
SFT18646.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 0.674
SFT25155.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 0.654
SFT21209.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.607
SFS83135.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.589
SFS57658.1
Tripartite ATP-independent transporter solute receptor, DctP family.
    0.579
SFS43331.1
Tat (twin-arginine translocation) pathway signal sequence; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
    0.540
SFS40247.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
    0.532
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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