STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT20206.1Alcohol dehydrogenase, class IV. (381 aa)    
Predicted Functional Partners:
SFT20199.1
Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.
 
 0.960
SFT20192.1
L-glutamine synthetase.
 
   
 0.910
SFT20184.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
     0.849
SFT20170.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
   
 0.826
SFT20176.1
TRAP transporter, DctM subunit.
 
   
 0.784
SFT20153.1
Transcriptional regulator, RpiR family.
 
   
 0.761
SFT20162.1
Predicted N-formylglutamate amidohydrolase.
 
   
 0.736
SFS35719.1
Alcohol dehydrogenase.
  
 
 0.710
SFT03028.1
Alcohol dehydrogenase, propanol-preferring.
  
 
 0.710
SFS79388.1
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase.
  
 
 0.678
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.