STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT21430.1TRAP transporter, DctM subunit. (434 aa)    
Predicted Functional Partners:
SFT21422.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
   0.902
SFT21414.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.897
SFT13238.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.784
SFS57730.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.680
SFS43331.1
Tat (twin-arginine translocation) pathway signal sequence; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
    0.665
SFS83135.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.654
SFT18646.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.644
SFT25155.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 0.606
SFT21437.1
Transcriptional regulator, DeoR family.
       0.594
SFT24800.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.558
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.