STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT21540.1Type IV secretion system protein VirB5. (238 aa)    
Predicted Functional Partners:
SFT21523.1
Type IV secretion system protein VirB6.
   
 
 0.967
SFT21549.1
Type IV secretion system protein VirB4.
     
 0.836
SFT21559.1
Type IV secretion system protein VirB3.
     
 0.831
SFT21567.1
Type IV secretion system protein VirB2.
     
 0.796
SFT21575.1
Type IV secretion system protein VirB1.
     
 0.784
SFT21532.1
Hypothetical protein.
       0.748
SFT21494.1
Type IV secretion system protein VirB9.
     
 0.661
SFT21501.1
Type IV secretion system protein VirB8.
     
 0.661
SFT21476.1
Type IV secretion system protein VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
     
 0.659
SFT21485.1
Type IV secretion system protein VirB10.
     
 0.659
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.