STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT22109.1L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (369 aa)    
Predicted Functional Partners:
SFT18480.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
   
 0.764
SFT20002.1
L-rhamnose mutarotase.
 
   
 0.745
SFT18435.1
Predicted dehydrogenase.
 
     0.732
SFT18465.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-).
 
     0.524
SFT19993.1
Altronate hydrolase.
 
  
 0.517
SFT25825.1
D-threo-aldose 1-dehydrogenase.
  
 0.485
SFT18487.1
Multiple sugar transport system substrate-binding protein.
 
     0.473
SFT22100.1
Phospholipase/lecithinase/hemolysin.
       0.458
SFT18662.1
alpha-L-rhamnosidase.
 
     0.452
SFT12973.1
Transcriptional regulator, IclR family.
 
   
 0.435
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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