STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT23043.1Oligoendopeptidase F. (604 aa)    
Predicted Functional Partners:
SFS82319.1
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
   0.670
SFT13000.1
Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family.
 
    0.634
SFS43865.1
Uncharacterized ACR, COG1399.
 
     0.610
SFT23036.1
Hypothetical protein.
       0.579
SFT23068.1
Lysophospholipase.
  
   0.510
SFS33907.1
Carboxypeptidase Taq; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
 
    0.502
SFT23063.1
Putative mRNA 3-end processing factor.
  
    0.488
SFT23056.1
DNA ligase-1.
       0.473
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
     
 0.466
SFT23049.1
Arginine decarboxylase.
       0.463
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.