STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT23354.1Hypothetical protein. (187 aa)    
Predicted Functional Partners:
SFT23348.1
Paraquat-inducible protein B.
   
 0.981
SFT23337.1
Paraquat-inducible protein A.
 
  
 0.970
SFT23342.1
Paraquat-inducible protein A.
 
  
 0.969
SFS73333.1
Hint domain-containing protein.
  
     0.531
SFS95474.1
8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family.
 
     0.527
SFT27397.1
SH3 domain-containing protein.
  
     0.527
SFT07195.1
Chromosome partitioning protein, ParB family.
  
     0.492
SFT23332.1
Acetoin utilization deacetylase AcuC.
       0.486
SFT23359.1
Hypothetical protein.
       0.444
SFS88261.1
Autotransporter secretion inner membrane protein TamB.
 
     0.442
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.