STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT24271.1Predicted dehydrogenase. (376 aa)    
Predicted Functional Partners:
SFT24265.1
Succinoglycan biosynthesis protein ExoU.
     
 0.779
SFT24233.1
Predicted dehydrogenase.
  
     0.653
SFS56831.1
Predicted dehydrogenase.
  
     0.615
SFT24276.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
     0.537
SFT24259.1
Succinoglycan biosynthesis protein ExoO.
     
 0.513
SFS56887.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Belongs to the TPP enzyme family.
  
  
 0.410
SFT20988.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Belongs to the TPP enzyme family.
  
  
 0.410
SFS56901.1
5-deoxyglucuronate isomerase.
  
  
 0.403
SFT20971.1
5-deoxyglucuronate isomerase.
  
  
 0.403
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.