STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT25989.1Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (451 aa)    
Predicted Functional Partners:
SFS64175.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.991
pdhA-2
2-oxoisovalerate dehydrogenase E1 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
  
 0.882
SFS44400.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
  
 0.778
SFS54249.1
N-methylglutamate synthase subunit C precursor; Belongs to the glutamate synthase family.
  
 
 0.770
SFT09285.1
Glutamate synthase domain-containing protein 2; Belongs to the glutamate synthase family.
  
 
 0.770
SFS40425.1
Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family.
   
 0.763
SFS64782.1
SIR2-like domain-containing protein.
 
 0.762
cobB-2
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
 0.727
SFS95385.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
  
 0.636
SFT19027.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
  
 0.636
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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