STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT27304.1Putative quinone oxidoreductase, YhdH/YhfP family. (325 aa)    
Predicted Functional Partners:
SFT27308.1
Dimethylsulfoniopropionate lyase DddL.
  
  
 0.855
SFT27299.1
Transcriptional regulator, TetR family.
 
  
 0.791
SFS96393.1
Acyl transferase domain-containing protein.
  
 
 0.672
SFT02855.1
Hypothetical protein.
       0.491
SFT07154.1
3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.476
SFT13448.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.476
SFT22549.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.476
SFS39756.1
Hypothetical protein.
 
  
 0.458
SFT20214.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
     
 0.447
cobB-2
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
  
 0.418
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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