STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ16172.1FKBP-type peptidyl-prolyl cis-trans isomerase FklB; Manually curated. (172 aa)    
Predicted Functional Partners:
SDQ79153.1
Molecular chaperone HtpG.
   
 0.919
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.815
SDQ28977.1
Cell surface protein SprA.
    
   0.772
SDQ83146.1
Tetratricopeptide repeat-containing protein.
   
 0.697
SDQ68006.1
Hypothetical protein.
    
 
 0.674
SDQ77327.1
Protein of unknown function.
    
 
 0.674
SDQ31984.1
Homoserine dehydrogenase.
    
   0.653
infA
Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
   0.635
tgt
tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]
    
  0.621
SDQ38273.1
DNA polymerase V; Belongs to the DNA polymerase type-Y family.
  
 
   0.590
Your Current Organism:
Chryseobacterium soldanellicola
NCBI taxonomy Id: 311333
Other names: C. soldanellicola, Chryseobacterium soldanellicola Park et al. 2006, DSM 17072, KCTC 12382, NBRC 100864, strain PSD1-4
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