STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ39935.1Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family. (109 aa)    
Predicted Functional Partners:
SDQ39986.1
Iron-regulated ABC transporter membrane component SufB.
  
 
 0.863
SDQ10940.1
Cysteine desulfurase.
 
  
 0.817
SDQ40036.1
Fe-S cluster assembly ATP-binding protein.
  
 
 0.807
SDQ40065.1
Iron-regulated ABC transporter permease protein SufD.
  
 
 0.779
SDQ06156.1
Tetratricopeptide repeat-containing protein.
    
 
 0.765
SDR04934.1
Hypothetical protein.
    
 
 0.765
SDQ72140.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
  
 
 0.721
SDQ77191.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
  
 
 0.721
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
 0.719
SDQ32045.1
Hypothetical protein.
    
 
 0.704
Your Current Organism:
Chryseobacterium soldanellicola
NCBI taxonomy Id: 311333
Other names: C. soldanellicola, Chryseobacterium soldanellicola Park et al. 2006, DSM 17072, KCTC 12382, NBRC 100864, strain PSD1-4
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