STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ83146.1Tetratricopeptide repeat-containing protein. (170 aa)    
Predicted Functional Partners:
SDQ07817.1
ATPase family associated with various cellular activities (AAA).
   
 0.986
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.982
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.969
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.969
SDR05719.1
Two component regulator propeller.
  
 0.965
SDQ10005.1
Signal transduction histidine kinase.
  
 0.962
SDR03298.1
Ankyrin repeat.
  
 0.955
SDR04890.1
PAS domain S-box-containing protein.
 
 0.951
SDR17980.1
PAS domain-containing protein.
 
 0.947
SDQ11498.1
Hypothetical protein.
   
 0.944
Your Current Organism:
Chryseobacterium soldanellicola
NCBI taxonomy Id: 311333
Other names: C. soldanellicola, Chryseobacterium soldanellicola Park et al. 2006, DSM 17072, KCTC 12382, NBRC 100864, strain PSD1-4
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.