STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR14189.1Beta-glucanase, GH16 family. (269 aa)    
Predicted Functional Partners:
SDQ12064.1
Glycerophosphoryl diester phosphodiesterase.
 
   
  0.835
SDR14168.1
Glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
 
   
 0.766
SDR14206.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
  
 0.656
SDR14229.1
Glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
 
   
 0.621
SDR15570.1
Rhamnogalacturonan endolyase.
 
  
 0.608
SDR14286.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.505
SDR14266.1
Starch-binding associating with outer membrane.
 
     0.500
SDQ06718.1
Hexosaminidase.
 
  
  0.498
SDQ10458.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
    
 0.483
SDQ09150.1
Glucuronoarabinoxylan endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 30 family.
 
   
 0.464
Your Current Organism:
Chryseobacterium soldanellicola
NCBI taxonomy Id: 311333
Other names: C. soldanellicola, Chryseobacterium soldanellicola Park et al. 2006, DSM 17072, KCTC 12382, NBRC 100864, strain PSD1-4
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