STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH61347.1Cupin domain-containing protein. (107 aa)    
Predicted Functional Partners:
SDH61369.1
Lysophospholipase L1.
       0.726
SDH61405.1
Pectinesterase.
       0.705
SDH78342.1
Protein N-acetyltransferase, RimJ/RimL family.
    
  0.569
SDI86303.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
  0.524
SDI22707.1
Regulatory protein, gntR family.
  
    0.523
SDI77568.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
 0.491
SDH61558.1
Unsaturated rhamnogalacturonyl hydrolase.
 
     0.469
SDI91450.1
Phosphopantetheine attachment site.
     
 0.438
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.427
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.421
Your Current Organism:
Chryseobacterium taeanense
NCBI taxonomy Id: 311334
Other names: C. taeanense, Chryseobacterium taeanense Park et al. 2006, DSM 17071, KCTC 12381, NBRC 100863, strain PHA3-4
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