STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH66027.1Hypothetical protein. (128 aa)    
Predicted Functional Partners:
SDH66056.1
Branched-chain amino acid aminotransferase.
 
     0.867
SDH64629.1
Protein of unknown function.
  
     0.737
SDI85765.1
Protein of unknown function.
 
     0.733
SDH53429.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.699
SDH65957.1
OstA-like protein.
  
     0.691
SDI31914.1
Rod shape-determining protein MreD.
  
     0.684
SDI32586.1
Hypothetical protein.
  
     0.676
SDI29054.1
Cell division protein FtsQ.
  
     0.676
SDI71273.1
Hypothetical protein.
  
     0.593
SDI83968.1
Threonine/homoserine/homoserine lactone efflux protein.
  
     0.590
Your Current Organism:
Chryseobacterium taeanense
NCBI taxonomy Id: 311334
Other names: C. taeanense, Chryseobacterium taeanense Park et al. 2006, DSM 17071, KCTC 12381, NBRC 100863, strain PHA3-4
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