STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH80943.1alpha-N-arabinofuranosidase. (660 aa)    
Predicted Functional Partners:
SDH80725.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
 
 0.917
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.861
SDH81330.1
Hypothetical protein.
 
  
 0.849
SDH80623.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
 
 0.759
SDI76679.1
Beta-mannosidase; Belongs to the glycosyl hydrolase 2 family.
    
 0.673
SDI10794.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.634
SDH80520.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.630
SDI16539.1
Aldo/keto reductase.
    
  0.630
araB
L-ribulokinase.
 
  
 0.626
uxaC
Glucuronate isomerase.
     
 0.608
Your Current Organism:
Chryseobacterium taeanense
NCBI taxonomy Id: 311334
Other names: C. taeanense, Chryseobacterium taeanense Park et al. 2006, DSM 17071, KCTC 12381, NBRC 100863, strain PHA3-4
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