STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI01803.1Lipopolysaccharide transport system permease protein. (282 aa)    
Predicted Functional Partners:
SDI01834.1
Lipopolysaccharide transport system ATP-binding protein.
 
 0.999
SDI36172.1
Polysaccharide export outer membrane protein.
 
 
 0.866
SDH67469.1
Polysaccharide export outer membrane protein.
  
 
 0.804
SDH79636.1
Polysaccharide export outer membrane protein.
  
 
 0.804
SDH53169.1
Glycosyl transferases group 1.
  
  
 0.761
SDI01924.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
  
    0.699
SDI01862.1
WxcM-like, C-terminal.
     
 0.692
SDI01896.1
Transferase hexapeptide (six repeat-containing protein).
       0.690
SDH53077.1
UDP-galactopyranose mutase.
  
  
 0.686
SDI01952.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.684
Your Current Organism:
Chryseobacterium taeanense
NCBI taxonomy Id: 311334
Other names: C. taeanense, Chryseobacterium taeanense Park et al. 2006, DSM 17071, KCTC 12381, NBRC 100863, strain PHA3-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.