STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI61204.1RHS repeat-associated core domain-containing protein. (306 aa)    
Predicted Functional Partners:
SDI61368.1
Hypothetical protein.
 
     0.854
SDI61399.1
Hypothetical protein.
 
     0.825
SDI87284.1
Hypothetical protein.
 
     0.781
SDI61181.1
Hypothetical protein.
       0.773
SDH98964.1
Hypothetical protein.
 
     0.771
SDI87576.1
Hypothetical protein.
 
     0.765
SDH84924.1
YD repeat-containing protein.
 
     0.761
SDI61159.1
RHS repeat-associated core domain-containing protein.
 
    
0.582
SDI61423.1
Por secretion system C-terminal sorting domain-containing protein.
 
     0.576
SDI61342.1
RHS repeat-associated core domain-containing protein.
 
    
0.525
Your Current Organism:
Chryseobacterium taeanense
NCBI taxonomy Id: 311334
Other names: C. taeanense, Chryseobacterium taeanense Park et al. 2006, DSM 17071, KCTC 12381, NBRC 100863, strain PHA3-4
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