STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI86238.1Ferritin-like metal-binding protein YciE. (208 aa)    
Predicted Functional Partners:
SDI86303.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
    0.652
SDI86272.1
Hypothetical protein.
       0.590
SDI86338.1
Threonine dehydrogenase.
 
     0.583
SDI86208.1
Hypothetical protein.
       0.575
SDI00227.1
Low affinity Fe/Cu permease.
  
    0.521
SDH54847.1
Bifunctional non-homologous end joining protein LigD.
 
     0.514
SDH54879.1
Bifunctional non-homologous end joining protein LigD.
 
     0.503
SDI86399.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.447
SDI86371.1
Amidohydrolase, PncC family; Belongs to the CinA family.
  
    0.445
Your Current Organism:
Chryseobacterium taeanense
NCBI taxonomy Id: 311334
Other names: C. taeanense, Chryseobacterium taeanense Park et al. 2006, DSM 17071, KCTC 12381, NBRC 100863, strain PHA3-4
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