STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_0503ABC transporter. (225 aa)    
Predicted Functional Partners:
Avi_0504
ABC transporter substrate binding protein (proline/glycine/betaine).
 
 0.999
Avi_0501
ABC transporter nucleotide binding/ATPase protein (proline/glycine/betaine).
 
 0.997
Avi_0502
ABC transporter membrane spanning protein (proline/glycine/betaine).
 
  
 
0.984
Avi_2575
ABC transporter nucleotide binding/ATPase protein.
 
  
 0.651
Avi_3283
ABC transporter nucleotide binding/ATPase protein (proline/glycine betaine).
 
  
 0.607
hutC
Histidine utilization repressor.
       0.591
hutH
Histidine ammonia-lyase.
       0.417
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.