STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_0577Glycosyltransferase. (664 aa)    
Predicted Functional Partners:
Avi_2750
Hypothetical protein.
  
 
 0.800
Avi_1354
Gene transfer agent (GTA) orfg15.
 
  
 0.735
Avi_3865
TPR repeat protein.
  
 
 0.730
Avi_3866
TPR repeat protein.
  
 
 0.730
celB
celB protein; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
 
 0.708
Avi_1352
Conserved hypothetical protein.
 
   
 0.682
Avi_1289
Conserved hypothetical protein.
  
  
 0.648
Avi_1346
Conserved hypothetical protein.
  
    0.627
Avi_3451
GGDEF family protein.
  
  
 0.627
Avi_1072
Conserved hypothetical protein.
  
  
 0.626
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.