STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_0846Conserved hypothetical protein. (374 aa)    
Predicted Functional Partners:
Avi_1297
Acylase and diesterase protein.
  
     0.597
kduI
Deoxyuronase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.574
Avi_2409
Conserved hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
   
 0.540
Avi_5759
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
     0.536
dadA
D-amino acid dehydrogenase small subunit.
       0.491
Avi_0847
Conserved hypothetical protein.
       0.471
Avi_5757
Conserved hypothetical protein.
 
   
 0.460
Avi_0842
CDPdiacylglycerol diphosphatase protein.
 
     0.457
Avi_5950
Crocetin dialdehyde.
  
     0.423
peh
Polygalacturonase/Pectinase; Belongs to the glycosyl hydrolase 28 family.
 
     0.419
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.