STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_1007ABC transporter nucleotide binding/ATPase protein (cobalt). (226 aa)    
Predicted Functional Partners:
Avi_1006
ABC transporter membrane spanning protein.
 
 0.999
bioY
Biotin synthesis BioY protein.
 
 
 0.998
mnhA-2
Na+/H+ antiporter.
   
 0.956
cobJ
precorrin-3B C17-methyltransferase.
  
  
 0.708
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.643
Avi_0096
ABC transporter nucleotide binding/ATPase protein (sugar); Belongs to the ABC transporter superfamily.
  
  
  0.633
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.616
Avi_0999
Deacetylase.
       0.616
kka
Aminoglycoside phosphotransferase.
       0.587
Avi_1010
Conserved hypothetical protein.
       0.586
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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