Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avi_0710 | Avi_1637 | Avi_0710 | Avi_1637 | Integrase protein. | Integrase. | 0.503 |
Avi_1637 | Avi_0710 | Avi_1637 | Avi_0710 | Integrase. | Integrase protein. | 0.503 |
Avi_1637 | istA-2 | Avi_1637 | Avi_1639 | Integrase. | IS21 family transposase. | 0.438 |
Avi_1637 | istB-2 | Avi_1637 | Avi_1638 | Integrase. | IS21 family transposase. | 0.459 |
Avi_1637 | xerC | Avi_1637 | Avi_4114 | Integrase. | Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.698 |
Avi_1637 | xerD | Avi_1637 | Avi_4056 | Integrase. | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.719 |
istA-2 | Avi_1637 | Avi_1639 | Avi_1637 | IS21 family transposase. | Integrase. | 0.438 |
istA-2 | istB-2 | Avi_1639 | Avi_1638 | IS21 family transposase. | IS21 family transposase. | 0.951 |
istB-2 | Avi_1637 | Avi_1638 | Avi_1637 | IS21 family transposase. | Integrase. | 0.459 |
istB-2 | istA-2 | Avi_1638 | Avi_1639 | IS21 family transposase. | IS21 family transposase. | 0.951 |
xerC | Avi_1637 | Avi_4114 | Avi_1637 | Site-specific tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | Integrase. | 0.698 |
xerD | Avi_1637 | Avi_4056 | Avi_1637 | Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | Integrase. | 0.719 |