Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Avi_2000Conserved hypothetical protein. (83 aa)    
Predicted Functional Partners:
Avi_1998
Conserved hypothetical protein.
 
   
 0.946
Avi_3782
DNA-damage-inducible protein.
 
 
 0.775
Avi_1232
Transcriptional regulator protein.
   
 
 0.580
Avi_3788
Conserved hypothetical protein.
   
 
 0.580
Avi_2001
Conserved hypothetical protein.
       0.553
Avi_2181
ABC transporter substrate binding protein.
 
     0.495
intD-2
Phage-related integrase.
  
     0.480
Avi_5802
Conserved hypothetical protein.
 
     0.464
exoH
Succinoglycan biosynthesis protein.
  
     0.462
exoQ
Exopolysaccharide production protein.
  
     0.442
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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