Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Avi_2007Conserved hypothetical protein. (513 aa)    
Predicted Functional Partners:
Avi_2009
Glycosyl transferase.
 
 
 0.931
Avi_0712
Cell surface polysaccharide export ABC-2 transporter ATP-binding protein.
 
  
 0.869
Avi_3275
Conserved hypothetical protein.
  
 
 0.825
Avi_1950
Polysialic acid transport protein.
  
  
 0.820
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.803
trmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
  
 0.789
Avi_3865
TPR repeat protein.
  
 
 0.786
Avi_3866
TPR repeat protein.
  
 
 0.786
exoN
UTP-glucose-1-phosphate uridylyltransferase.
  
  
 0.750
Avi_1495
Glycosyltransferase protein.
 
 
 0.749
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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