STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_2288Conserved hypothetical protein. (101 aa)    
Predicted Functional Partners:
Avi_1784
Conserved hypothetical protein.
  
    0.795
Avi_1720
NADH-quinone oxidoreductase chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
  
    0.747
Avi_3971
Methyltransferase.
  
     0.744
cycM
Cytochrome c.
  
     0.700
Avi_3172
Conserved hypothetical protein.
 
     0.637
Avi_0199
Conserved hypothetical protein.
 
     0.620
Avi_2263
Conserved hypothetical protein.
  
     0.605
Avi_0430
Conserved hypothetical protein.
 
     0.585
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.578
Avi_2824
Conserved hypothetical protein.
  
     0.574
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.