Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Avi_0828 | Avi_1303 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.583 |
Avi_0828 | Avi_1888 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.648 |
Avi_0828 | Avi_2106 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.711 |
Avi_0828 | Avi_2535 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.730 |
Avi_0828 | Avi_2536 | Conserved hypothetical protein. | Branched-chain amino acid permease. | 0.673 |
Avi_0828 | Avi_2539 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.796 |
Avi_0828 | Avi_3602 | Conserved hypothetical protein. | Outer surface protein. | 0.574 |
Avi_0828 | Avi_3983 | Conserved hypothetical protein. | Polysaccharide biosynthesis associated protein. | 0.428 |
Avi_1303 | Avi_0828 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.583 |
Avi_1303 | Avi_1744 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.514 |
Avi_1303 | Avi_1888 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.719 |
Avi_1303 | Avi_2535 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.737 |
Avi_1303 | Avi_2536 | Conserved hypothetical protein. | Branched-chain amino acid permease. | 0.723 |
Avi_1303 | Avi_3602 | Conserved hypothetical protein. | Outer surface protein. | 0.477 |
Avi_1303 | Avi_3983 | Conserved hypothetical protein. | Polysaccharide biosynthesis associated protein. | 0.538 |
Avi_1544 | Avi_2535 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.680 |
Avi_1544 | Avi_2536 | Conserved hypothetical protein. | Branched-chain amino acid permease. | 0.591 |
Avi_1544 | Avi_3602 | Conserved hypothetical protein. | Outer surface protein. | 0.463 |
Avi_1744 | Avi_1303 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.514 |
Avi_1744 | Avi_1888 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.602 |
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