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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_3003I protein. (323 aa)    
Predicted Functional Partners:
Avi_3001
Major head subunit protein.
 
  
 0.959
Avi_3002
Conserved hypothetical protein.
 
     0.953
Avi_2998
Conserved hypothetical protein.
 
   
 0.901
Avi_2997
Mu-like prophage protein.
 
    0.900
Avi_3394
Divalent cation transporter.
 
    0.840
Avi_2995
Conserved hypothetical protein.
 
     0.826
Avi_3005
Prophage MuSo2 F protein.
 
    0.809
Avi_3006
Conserved hypothetical protein.
 
    0.804
Avi_3047
Conserved hypothetical protein.
 
    0.804
Avi_3008
Conserved hypothetical protein.
 
     0.789
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.