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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_3207Conserved hypothetical protein. (313 aa)    
Predicted Functional Partners:
mutT
MutT/nudix family protein; Belongs to the Nudix hydrolase family.
  
     0.575
copC
Copper tolerance protein.
  
     0.561
exoH
Succinoglycan biosynthesis protein.
  
     0.531
mutT-2
MutT/nudix family protein.
  
     0.515
Avi_2784
Conserved hypothetical protein.
  
     0.485
Avi_2181
ABC transporter substrate binding protein.
  
     0.484
Avi_1774
Acetyltransferase.
  
     0.475
Avi_1032
Conserved hypothetical protein.
  
     0.472
exoT
Succinoglycan biosynthesis transport protein.
 
     0.405
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.