Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Avi_3208ABC transporter nucleotide binding/ATPase protein. (625 aa)    
Predicted Functional Partners:
Avi_3213
ABC transporter nucleotide binding/ATPase protein.
 
  
 
0.936
Avi_4330
Polyketide synthetase protein.
  
 
 0.564
Avi_5693
Non-ribosomal peptide synthetase domain-containing protein.
  
 
 0.545
Avi_1472
ABC transporter nucleotide binding/ATPase protein.
  
 
0.506
Avi_3210
Aminoglycoside N6'-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to the 6'-amino group of aminoglycoside molecules conferring resistance to antibiotics containing the purpurosamine ring.
       0.504
Avi_3865
TPR repeat protein.
  
 0.471
Avi_3866
TPR repeat protein.
  
 0.471
dnaK
DNAK Protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.454
Avi_0999
Deacetylase.
   
 0.412
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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