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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_3208ABC transporter nucleotide binding/ATPase protein. (625 aa)    
Predicted Functional Partners:
Avi_3213
ABC transporter nucleotide binding/ATPase protein.
 
  
 
0.917
Avi_4330
Polyketide synthetase protein.
  
 0.639
Avi_5693
Non-ribosomal peptide synthetase domain-containing protein.
  
 
 0.588
Avi_3210
Aminoglycoside N6'-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to the 6'-amino group of aminoglycoside molecules conferring resistance to antibiotics containing the purpurosamine ring.
       0.504
dnaK
DNAK Protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.446
Avi_3865
TPR repeat protein.
  
 0.435
Avi_3866
TPR repeat protein.
  
 0.435
Avi_3342
Peptide synthetase.
  
 
 0.434
Avi_3863
ABC transporter nucleotide binding/ATPase protein.
 
 
  
0.434
Avi_1472
ABC transporter nucleotide binding/ATPase protein.
  
 
0.417
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.