STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_3257Phospholipase. (101 aa)    
Predicted Functional Partners:
vgrG-3
vgrG protein.
 
   
 0.775
impK
OmpA-type porin.
 
  
 0.691
impJ
Conserved hypothetical protein.
 
  
 0.670
impL
IcmF family protein.
 
  
 0.657
impH
Conserved hypothetical protein.
 
  
 0.623
impG
Conserved hypothetical protein.
 
  
 0.600
vgrG
vgrG protein.
 
   
 0.594
vgrG-4
vgrG protein.
 
   
 0.589
vgrG-2
vgrG protein.
 
   
 0.586
Avi_6054
Conserved hypothetical protein.
 
   
 0.557
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.