STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_3662Hypothetical protein. (64 aa)    
Predicted Functional Partners:
Avi_3661
MFS permease.
       0.785
Avi_3531
Conserved hypothetical protein.
  
     0.670
Avi_3220
Conserved hypothetical protein.
  
     0.668
Avi_0791
Conserved hypothetical protein.
  
     0.619
Avi_3445
Conserved hypothetical protein.
 
     0.606
Avi_3557
Conserved hypothetical protein.
  
     0.542
Avi_1888
Conserved hypothetical protein.
  
     0.538
Avi_2196
Conserved hypothetical transmembrane protein.
  
     0.536
Avi_0985
Divalent cation transporter.
  
     0.532
Avi_1667
Conserved hypothetical protein.
  
     0.522
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.