Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avi_4250 | Avi_4251 | Avi_4250 | Avi_4251 | Conserved hypothetical protein. | Histone acetyl transferase protein. | 0.803 |
Avi_4250 | Avi_4254 | Avi_4250 | Avi_4254 | Conserved hypothetical protein. | ATPase protein. | 0.898 |
Avi_4250 | acd | Avi_4250 | Avi_0599 | Conserved hypothetical protein. | acyl-CoA dehydrogenase. | 0.605 |
Avi_4250 | galM | Avi_4250 | Avi_4249 | Conserved hypothetical protein. | Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. | 0.535 |
Avi_4250 | metA | Avi_4250 | Avi_4253 | Conserved hypothetical protein. | Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. | 0.798 |
Avi_4250 | mmgC | Avi_4250 | Avi_0986 | Conserved hypothetical protein. | acyl-CoA dehydrogenase. | 0.562 |
Avi_4251 | Avi_4250 | Avi_4251 | Avi_4250 | Histone acetyl transferase protein. | Conserved hypothetical protein. | 0.803 |
Avi_4251 | Avi_4254 | Avi_4251 | Avi_4254 | Histone acetyl transferase protein. | ATPase protein. | 0.506 |
Avi_4251 | galM | Avi_4251 | Avi_4249 | Histone acetyl transferase protein. | Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. | 0.497 |
Avi_4251 | metA | Avi_4251 | Avi_4253 | Histone acetyl transferase protein. | Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. | 0.777 |
Avi_4254 | Avi_4250 | Avi_4254 | Avi_4250 | ATPase protein. | Conserved hypothetical protein. | 0.898 |
Avi_4254 | Avi_4251 | Avi_4254 | Avi_4251 | ATPase protein. | Histone acetyl transferase protein. | 0.506 |
Avi_4254 | acd | Avi_4254 | Avi_0599 | ATPase protein. | acyl-CoA dehydrogenase. | 0.645 |
Avi_4254 | metA | Avi_4254 | Avi_4253 | ATPase protein. | Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. | 0.441 |
Avi_4254 | mmgC | Avi_4254 | Avi_0986 | ATPase protein. | acyl-CoA dehydrogenase. | 0.613 |
acd | Avi_4250 | Avi_0599 | Avi_4250 | acyl-CoA dehydrogenase. | Conserved hypothetical protein. | 0.605 |
acd | Avi_4254 | Avi_0599 | Avi_4254 | acyl-CoA dehydrogenase. | ATPase protein. | 0.645 |
galM | Avi_4250 | Avi_4249 | Avi_4250 | Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. | Conserved hypothetical protein. | 0.535 |
galM | Avi_4251 | Avi_4249 | Avi_4251 | Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. | Histone acetyl transferase protein. | 0.497 |
galM | metA | Avi_4249 | Avi_4253 | Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. | Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. | 0.565 |
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