STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_4319Metal dependent phosphohydrolase with a response regulator receiver protein. (382 aa)    
Predicted Functional Partners:
Avi_4314
Methyl-accepting chemotaxis protein.
 
   0.830
pleD-4
Two component response regulator.
 
  
 0.816
cheW-6
Chemotaxis protein.
 
    0.813
cheY-3
Chemotaxis receiver protein.
 
  
0.809
cheA-2
Chemotaxis protein histidine kinase.
  
    0.787
Avi_2229
GGDEF domain protein.
  
 0.784
Avi_4318
Hypothetical protein.
       0.783
Avi_3353
GGDEF family protein.
 
 0.772
Avi_0522
Two component sensor kinase/response regulator hybrid.
 
 0.768
Avi_3451
GGDEF family protein.
 
 
 0.761
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.