STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_4378Conserved hypothetical protein. (231 aa)    
Predicted Functional Partners:
Avi_2824
Conserved hypothetical protein.
  
   
 0.777
rpmI
50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
    0.773
Avi_3695
Conserved hypothetical protein; Belongs to the UPF0335 family.
  
   
 0.770
Avi_0009
Membrane associated transporter protein.
  
     0.759
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.735
uvrD
ATP-dependant DNA helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.727
addB
Double-strand break repair protein AddB.
  
     0.710
Avi_1100
Conserved hypothetical protein.
  
     0.696
Avi_4000
Conserved hypothetical protein.
  
     0.680
Avi_2958
Transcriptional regulator HTH family.
  
     0.675
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.