STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsB-2ABC transporter substrate binding protein (ribose). (337 aa)    
Predicted Functional Partners:
rbsA-3
ABC transporter nucleotide binding/ATPase protein (ribose).
 
 0.986
rbsA-2
ABC transporter nucleotide binding/ATPase protein (ribose).
 
 0.966
rbsB
ABC transporter substrate binding protein (ribose).
  
  
  0.963
Avi_5305
ABC transporter, binding protein.
  
  
  0.946
rbsC-3
ABC transporter membrane spanning protein (ribose); Belongs to the binding-protein-dependent transport system permease family.
 
   0.930
Avi_5169
ABC transporter membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
   0.927
rbsB-3
ABC transporter substrate binding protein (ribose).
  
  
 
0.927
Avi_6100
Carbohydrate binding protein.
  
  
 
0.927
Avi_5162
ABC transporter binding protein.
  
  
  0.917
Avi_5039
ABC-type sugar transport system, periplasmic component.
  
  
  0.913
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.