Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avi_3342 | Avi_5196 | Avi_3342 | Avi_5196 | Peptide synthetase. | Conserved hypothetical protein. | 0.491 |
Avi_3342 | Avi_5198 | Avi_3342 | Avi_5198 | Peptide synthetase. | Monooxygenase. | 0.491 |
Avi_3342 | Avi_5693 | Avi_3342 | Avi_5693 | Peptide synthetase. | Non-ribosomal peptide synthetase domain-containing protein. | 0.994 |
Avi_5196 | Avi_3342 | Avi_5196 | Avi_3342 | Conserved hypothetical protein. | Peptide synthetase. | 0.491 |
Avi_5196 | Avi_5198 | Avi_5196 | Avi_5198 | Conserved hypothetical protein. | Monooxygenase. | 0.739 |
Avi_5196 | Avi_5199 | Avi_5196 | Avi_5199 | Conserved hypothetical protein. | Hippurate hydrolase. | 0.424 |
Avi_5196 | Avi_5200 | Avi_5196 | Avi_5200 | Conserved hypothetical protein. | Acetyltransferase. | 0.699 |
Avi_5196 | Avi_5693 | Avi_5196 | Avi_5693 | Conserved hypothetical protein. | Non-ribosomal peptide synthetase domain-containing protein. | 0.632 |
Avi_5198 | Avi_3342 | Avi_5198 | Avi_3342 | Monooxygenase. | Peptide synthetase. | 0.491 |
Avi_5198 | Avi_5196 | Avi_5198 | Avi_5196 | Monooxygenase. | Conserved hypothetical protein. | 0.739 |
Avi_5198 | Avi_5199 | Avi_5198 | Avi_5199 | Monooxygenase. | Hippurate hydrolase. | 0.504 |
Avi_5198 | Avi_5200 | Avi_5198 | Avi_5200 | Monooxygenase. | Acetyltransferase. | 0.635 |
Avi_5198 | Avi_5205 | Avi_5198 | Avi_5205 | Monooxygenase. | ABC transporter substrate binding protein. | 0.477 |
Avi_5198 | Avi_5479 | Avi_5198 | Avi_5479 | Monooxygenase. | FMNH2-dependent monooxygenase protein. | 0.465 |
Avi_5198 | Avi_5693 | Avi_5198 | Avi_5693 | Monooxygenase. | Non-ribosomal peptide synthetase domain-containing protein. | 0.632 |
Avi_5198 | acd-3 | Avi_5198 | Avi_5155 | Monooxygenase. | acyl-CoA dehydrogenase. | 0.453 |
Avi_5198 | acd-4 | Avi_5198 | Avi_5156 | Monooxygenase. | acyl-CoA dehydrogenase. | 0.469 |
Avi_5198 | acd-6 | Avi_5198 | Avi_6061 | Monooxygenase. | acyl-CoA dehydrogenase. | 0.529 |
Avi_5199 | Avi_5196 | Avi_5199 | Avi_5196 | Hippurate hydrolase. | Conserved hypothetical protein. | 0.424 |
Avi_5199 | Avi_5198 | Avi_5199 | Avi_5198 | Hippurate hydrolase. | Monooxygenase. | 0.504 |
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