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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_5259Conserved hypothetical protein. (224 aa)    
Predicted Functional Partners:
Avi_5258
Hypothetical protein.
       0.785
Avi_5257
Acetyltransferase.
 
     0.675
Avi_5260
Conserved hypothetical protein.
 
    0.559
Avi_5261
Valyl-tRNA synthetase.
  
     0.497
Avi_0861
Phage phi-C31 gp36 major capsid-like protein.
   
 
 0.436
peh
Polygalacturonase/Pectinase; Belongs to the glycosyl hydrolase 28 family.
 
 
   0.413
exsH
Endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein.
 
 
   0.402
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.