Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Avi_1509 | glxA | Avi_1509 | Avi_5747 | Transcriptional regulator AraC family. | Transcriptional regulator AraC family. | 0.692 |
Avi_3583 | glxA | Avi_3583 | Avi_5747 | Transcriptional regulator AraC family. | Transcriptional regulator AraC family. | 0.710 |
Avi_5743 | Avi_5748 | Avi_5743 | Avi_5748 | Conserved hypothetical protein. | Transcriptional regulator. | 0.549 |
Avi_5743 | glxA | Avi_5743 | Avi_5747 | Conserved hypothetical protein. | Transcriptional regulator AraC family. | 0.747 |
Avi_5743 | purF-2 | Avi_5743 | Avi_5749 | Conserved hypothetical protein. | Amidophosphoribosyltransferase. | 0.440 |
Avi_5743 | soxA-2 | Avi_5743 | Avi_5744 | Conserved hypothetical protein. | Sarcosine oxidase alpha subunit. | 0.997 |
Avi_5743 | soxB-2 | Avi_5743 | Avi_5746 | Conserved hypothetical protein. | Sarcosine oxidase beta subunit. | 0.957 |
Avi_5743 | soxD | Avi_5743 | Avi_3776 | Conserved hypothetical protein. | Sarcosine oxidase delta subunit. | 0.995 |
Avi_5743 | soxD-2 | Avi_5743 | Avi_5745 | Conserved hypothetical protein. | Sarcosine oxidase delta subunit. | 0.989 |
Avi_5743 | soxG | Avi_5743 | Avi_3778 | Conserved hypothetical protein. | Sarcosine oxidase gamma subunit. | 0.927 |
Avi_5748 | Avi_5743 | Avi_5748 | Avi_5743 | Transcriptional regulator. | Conserved hypothetical protein. | 0.549 |
Avi_5748 | glxA | Avi_5748 | Avi_5747 | Transcriptional regulator. | Transcriptional regulator AraC family. | 0.733 |
Avi_5748 | purF-2 | Avi_5748 | Avi_5749 | Transcriptional regulator. | Amidophosphoribosyltransferase. | 0.906 |
Avi_5748 | soxA-2 | Avi_5748 | Avi_5744 | Transcriptional regulator. | Sarcosine oxidase alpha subunit. | 0.694 |
Avi_5748 | soxB-2 | Avi_5748 | Avi_5746 | Transcriptional regulator. | Sarcosine oxidase beta subunit. | 0.674 |
Avi_5748 | soxD-2 | Avi_5748 | Avi_5745 | Transcriptional regulator. | Sarcosine oxidase delta subunit. | 0.596 |
glxA | Avi_1509 | Avi_5747 | Avi_1509 | Transcriptional regulator AraC family. | Transcriptional regulator AraC family. | 0.692 |
glxA | Avi_3583 | Avi_5747 | Avi_3583 | Transcriptional regulator AraC family. | Transcriptional regulator AraC family. | 0.710 |
glxA | Avi_5743 | Avi_5747 | Avi_5743 | Transcriptional regulator AraC family. | Conserved hypothetical protein. | 0.747 |
glxA | Avi_5748 | Avi_5747 | Avi_5748 | Transcriptional regulator AraC family. | Transcriptional regulator. | 0.733 |
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