STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_5847Conserved hypothetical protein. (541 aa)    
Predicted Functional Partners:
pccA
Propionyl-coenzyme A carboxylase alpha polypeptide.
 
0.998
pxpA
Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.996
Avi_5865
Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.992
Avi_5849
Conserved hypothetical protein; Belongs to the D-glutamate cyclase family.
 
    0.990
pcaR
Transcriptional regulator IclR family.
 
    0.934
Avi_5852
Conserved hypothetical protein.
 
  
 0.927
Avi_5093
Transcriptional regulator.
  
    0.925
Avi_5598
Transcriptional regulator.
  
    0.925
Avi_5869
Allophanate hydrolase subunit 1.
 
 
0.850
Avi_5870
Conserved hypothetical protein.
 
 
0.849
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.