STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frcRTranscriptional regulator ROK family. (409 aa)    
Predicted Functional Partners:
frcB
ABC transporter substrate binding protein (sugar).
 
  
 0.851
frcA
ABC transporter nucleotide binding/ATPase protein (sugar).
 
   
 0.828
Avi_5973
Conserved hypothetical protein; Belongs to the RbsD / FucU family.
 
     0.817
frcC
ABC transporter membrane spanning protein (sugar); Belongs to the binding-protein-dependent transport system permease family.
 
    0.761
frcK
Pantothenate kinase.
 
     0.578
Avi_3275
Conserved hypothetical protein.
   
 
 0.554
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.484
gltB
Glutamate synthase large subunit.
     
 0.455
cvgS
Two component sensor kinase/response regulator hybrid.
  
  
 0.435
scrK
Fructokinase.
 
  
 0.427
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.