STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Avi_6015GumH protein. (397 aa)    
Predicted Functional Partners:
Avi_6016
Conserved hypothetical protein.
 
     0.897
Avi_6017
Polysaccharide efflux transporter.
 
  
 0.794
tagA
Teichoic acid biosynthesis protein; Belongs to the glycosyltransferase 26 family.
 
 0.731
Avi_6018
Conserved hypothetical protein.
 
     0.705
Avi_6023
Conserved hypothetical protein.
  
 
   0.653
Avi_1663
Polysaccharide biosynthesis glycosyltransferase.
 
  
 0.646
exoN
UTP-glucose-1-phosphate uridylyltransferase.
  
 
 0.611
Avi_6014
Exopolysaccharide polymerization/transport protein.
 
  
 0.602
Avi_6020
Conserved hypothetical protein.
  
     0.602
Avi_6012
Endoglucanase precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
   
 0.590
Your Current Organism:
Agrobacterium vitis
NCBI taxonomy Id: 311402
Other names: A. vitis S4, Agrobacterium vitis S4, Agrobacterium vitis str. S4, Agrobacterium vitis strain S4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.