Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Avi_6179 | Avi_6181 | Prophage LambdaSo holin. | Phage terminase small subunit P27 family. | 0.640 |
Avi_6179 | Avi_6182 | Prophage LambdaSo holin. | Phage terminase-like protein large subunit. | 0.915 |
Avi_6179 | Avi_6184 | Prophage LambdaSo holin. | Portal protein. | 0.887 |
Avi_6179 | Avi_6185 | Prophage LambdaSo holin. | ClpP-type protease; Belongs to the peptidase S14 family. | 0.840 |
Avi_6179 | Avi_6186 | Prophage LambdaSo holin. | Phage major capsid protein HK97 family. | 0.744 |
Avi_6179 | Avi_6187 | Prophage LambdaSo holin. | Hypothetical protein. | 0.673 |
Avi_6179 | Avi_6188 | Prophage LambdaSo holin. | Conserved hypothetical protein. | 0.565 |
Avi_6179 | Avi_6189 | Prophage LambdaSo holin. | Bacteriophage head-tail adaptor. | 0.573 |
Avi_6179 | Avi_6190 | Prophage LambdaSo holin. | Conserved hypothetical protein. | 0.611 |
Avi_6181 | Avi_6179 | Phage terminase small subunit P27 family. | Prophage LambdaSo holin. | 0.640 |
Avi_6181 | Avi_6182 | Phage terminase small subunit P27 family. | Phage terminase-like protein large subunit. | 0.792 |
Avi_6181 | Avi_6184 | Phage terminase small subunit P27 family. | Portal protein. | 0.824 |
Avi_6181 | Avi_6185 | Phage terminase small subunit P27 family. | ClpP-type protease; Belongs to the peptidase S14 family. | 0.772 |
Avi_6181 | Avi_6186 | Phage terminase small subunit P27 family. | Phage major capsid protein HK97 family. | 0.751 |
Avi_6181 | Avi_6187 | Phage terminase small subunit P27 family. | Hypothetical protein. | 0.595 |
Avi_6181 | Avi_6188 | Phage terminase small subunit P27 family. | Conserved hypothetical protein. | 0.464 |
Avi_6181 | Avi_6189 | Phage terminase small subunit P27 family. | Bacteriophage head-tail adaptor. | 0.474 |
Avi_6181 | Avi_6190 | Phage terminase small subunit P27 family. | Conserved hypothetical protein. | 0.477 |
Avi_6181 | Avi_6192 | Phage terminase small subunit P27 family. | Hypothetical protein. | 0.484 |
Avi_6182 | Avi_6179 | Phage terminase-like protein large subunit. | Prophage LambdaSo holin. | 0.915 |
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